OptiNiSt - Calcium Imaging Pipeline Tool

OptiNiSt(Optical Neuroimage Studio) helps researchers try multiple data analysis methods, visualize the results, and construct the data analysis pipelines easily and quickly. OptiNiSt’s data-saving format follows NWB standards.

OptiNiSt also supports reproducibility of scientific research, standardization of analysis protocols, and developments of novel analysis tools as plug-in.

Main Features

• Easy-To-Create Workflow: allows you to create analysis pipelines easily on the GUI.

• Visualizing analysis results: supports you visualize the analysis results.

• Managing Workflows: records and reproduces the workflow pipelines easily.

USER GUIDE:

• Installation
  • Docker
  • Windows
  • Mac
  • Linux
  • Docker for Developer
  • Each Platforms for Developer
• Tutorials
  • Loading Sample data
  • Adding nodes to your Workflow
  • Checking the data
  • Selecting ROIs
  • Visualising analysis algorithms
  • Practice with Tutorial 2
• GUI GUIDE
  • Workflow
  • Visualize
  • Record
• HOST FOR MULTIUSER
  • About
  • Host Optinist yourself for multiuser use
  • Multi user mode usage
• OTHER
  • Procedure for adding a new algorithm
  • CUI execution
  • Implemented Analysis
• FOR DEVELOPERS
  • Style Guides
  • Pull Request
  • Architecture
  • Test